Tools   Select Another Resource Report Type

http://sciscore.com

Text-mining software that reviews methods sections of scientific articles. It provides a numerical score to represent the "reproducibility" of the article's research.

Proper citation: SciScore (RRID:SCR_016251) Copy   

•   Source: SciCrunch Registry

https://jetfighter.ecrlife.org

Web tool that automatically screens bioRxiv preprints for rainbow colormaps, which are not colorblind safe. Emails authors information on replacing these colormaps with colorblind safe alternatives. Screens preprints to improve data representation and colour-blind accessibility.

Proper citation: JetFighter (RRID:SCR_018498) Copy   

•   Source: SciCrunch Registry

https://github.com/quest-bih/barzooka

Software automated screening tool that detects bar graphs of continuous data in preprints submitted to bioRxiv. Used for detection of bar graphs for continuous data in BioRxiv preprints.

Proper citation: Barzooka (RRID:SCR_018508) Copy   

•   Source: SciCrunch Registry

http://shiny.ieis.tue.nl/sprite/

Web app to generate possible distributions of data matching given mean, SD, sample size, and range. Used for recovering data from summary statistics. Implementation of SPRITE in R programming environment.

Proper citation: rSPRITE (RRID:SCR_018524) Copy   

•   Source: SciCrunch Registry

https://github.com/bgcarlisle/TRNscreener

Software tool as R script to provide function that takes two arguments: path to folder of plain text files named by their DOI, and output filename. For each file in folder, it searches for trial identifiers based on regex matching and writes CSV that contains all trial registration numbers and in case of ClinicalTrials.gov entries, whether they correspond to registry entry on ClinicalTrials.gov.

Proper citation: Trial Registration Number screener (RRID:SCR_019211) Copy   

•   Source: SciCrunch Registry

https://github.com/quest-bih/oddpub

Text mining algorithm to screen biomedical publications to find data sharing statements. Algorithm that parses set of publications and detects which publications disseminated Open Data or Open Code together with publication. Tailored towards biomedical literature.

Proper citation: ODDPub (RRID:SCR_018385) Copy   

•   Source: SciCrunch Registry

http://hypothes.is/

Non-profit organization working towards developing an open platform for the collaborative evaluation of knowledge. It will combine sentence-level critique with community peer-review to provide commentary, references, and insight on top of news, blogs, scientific articles, books, terms of service, ballot initiatives, legislation and regulations, software code and more.

Proper citation: Hypothes.is (RRID:SCR_000430) Copy   

•   Source: SciCrunch Registry

https://github.com/serghiou/rtransparent

An R package that automatically identifies and extracts indicators of transparency (data availability, code availability, statements of conflicts of interest, statements of funding, statements of protocol registration) from TXT and PMC XML versions of published research articles in biomedicine.

Proper citation: rtransparent (RRID:SCR_019276) Copy   

•   Source: SciCrunch Registry

http://scicrunch.org/resources

Portal providing identifiers for Antibodies, Model Organisms, and Tools (software, databases, services) created in support of the Resource Identification Initiative, which aims to promote research resource identification, discovery, and reuse. The portal offers a central location for obtaining and exploring Research Resource Identifiers (RRIDs) - persistent and unique identifiers for referencing a research resource. A critical goal of the RII is the widespread adoption of RRIDs to cite resources in the biomedical literature and other places that reference their generation or use. RRIDs use established community identifiers where they exist, and are cross-referenced in their system where more than one identifier exists for a single resource.

Proper citation: Resource Identification Portal (RRID:SCR_004098) Copy   

•   Source: SciCrunch Registry

https://github.com/kilicogluh/limitation-recognizer

Software tool to recognize self acknowledged limitation sentences in biomedical articles. Automatic recognition of self acknowledged limitations in clinical research literature to support efforts in improving research transparency.

Proper citation: Limitation-Recognizer (RRID:SCR_018747) Copy   

•   Source: SciCrunch Registry

https://opensciencechain.org/

Provides data integrity using blockchain. Used for protecting integrity and provenance of research data.Open science chain utilizes distributed ledger technology (consortium blockchain) to securely store information about scientific data including its provenance to enable independent verification of its authenticity to establish trust in the research community.

Proper citation: Open Science Chain (RRID:SCR_018773) Copy   

•   Source: SciCrunch Registry

http://scigendetection.imag.fr/TPD52/

Web server as semi automated tool that identifies nucleotide sequences in scientific publications, determines whether they are correctly identified. Seeks for nucleotide sequences in pdf files and then call local version of blastn. Text mining and text analysis tool to allow peers to identify errors in published or forthcoming scientific literature. Used to search and extract gene identifiers and nucleotide sequences against human genomic and transcript database.

Proper citation: Seek and Blastn (RRID:SCR_016625) Copy   

•   Source: SciCrunch Registry

http://www.scite.ai

Web tool to classify citation statements from scientific articles using deep learning. Used for discovering and evaluating scientific articles via Smart Citations.

Proper citation: scite (RRID:SCR_018568) Copy   

•   Source: SciCrunch Registry

https://gricad-gitlab.univ-grenoble-alpes.fr/labbecy/scidetect

Software tool for detecting automatically generated academic papers. Discovers text that has been generated with SCIgen and other fake paper generators like Mathgen and Physgen. Provides on open source version of the scigen detector.

Proper citation: scidetect (RRID:SCR_020931) Copy   

•   Source: SciCrunch Registry